Stage 3 decided it: CARIÑO went from 4 seconds behind EYOB to 2:48 ahead.4 of the 40 seconds came from bonus seconds.
| # | Rider | Time | UCI pts |
|---|---|---|---|
| 1 | 12:25:13 | 40 | |
| 2 | +0:40 | 30 | |
| 3 | +2:36 | 25 | |
| 4 | +2:56 | 20 | |
| 5 | +3:32 | 15 | |
| 6 | +4:50 | 10 | |
| 7 | +5:22 | 5 | |
| 8 | +5:26 | 3 | |
| 9 | +6:30 | 3 | |
| 10 | +7:10 | 3 | |
| 11 | +8:04 | ||
| 12 | +8:18 | ||
| 13 | +8:40 | ||
| 14 | +8:47 | ||
| 15 | +9:18 |
| # | Team | |||||
|---|---|---|---|---|---|---|
| 1 | Terengganu Cycling Team | 41 | 1 | 3 | 4 | 5 |
| 2 | 7 Eleven - Cliqq Roadbike Philippines | 21 | 0 | 1 | 1 | 5 |
| 3 | Forca Amskins Racing | 15 | 0 | 0 | 1 | 5 |
| 4 | Uijeongbu Cycling Team | 3 | 0 | 1 | 5 | 5 |
| 5 | Pishgaman Cycling Team | 3 | 0 | 0 | 1 | 5 |
| 6 | Team Sapura Cycling | 0 | 0 | 0 | 2 | 5 |
| 7 | Oliver's Real Food Racing | 0 | 0 | 0 | 1 | 4 |
| 8 | KFC Cycling Team | 0 | 0 | 0 | 1 | 5 |
Winner E. CARIÑO, 25 · Youngest I. GROSPE, 19 · Oldest L. REYNANTE, 40